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我有一个包含数据框的类,其中列是因子(来自 phyloseq 包)。它看起来像这样:

> str(a)
'data.frame':   124 obs. of  21 variables:
Formal class 'sample_data' [package "phyloseq"] with 4 slots
  ..@ .Data    :List of 21
  .. ..$ : Factor w/ 2 levels "L25","L53": 2 2 2 2 2 2 2 2 1 1 ...
  .. ..$ : Factor w/ 1 level "feces metagenome": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "none": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "not applicable": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "not applicable": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "feces": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 2 levels "Germany:Berlin",..: 2 2 2 2 2 2 2 2 1 1 ...
  .. ..$ : Factor w/ 1 level "Mus musculus": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "not applicable": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "none": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "none": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 1 level "none": 1 1 1 1 1 1 1 1 1 1 ...
  .. ..$ : Factor w/ 3 levels "female","male",..: 1 1 1 1 2 2 1 1 3 3 ...

  ..@ names    : chr  "Library" "Organism" "Collection_date" "Env_biome" ...
  ..@ row.names: chr  "285L53" "286L53" "287L53" "288L53" ...
  ..@ .S3Class : chr "data.frame"

我可以毫无问题地在控制台中查看数据,但想在数据查看器中检查它。但是,如果我尝试这样做,我只会得到一个显示列名、列类型(即“因子”)以及所述因子的级别的表,如下所示

Name       Type                               Value
a          List[124x21(phyloseq::sample_data) A data.frame with 124 rows and 21 columns
 Library   factor                             Factor with 2 levels "L25", "L53"
 Organism  factor                             Factor with 1 level: "feces Metagenome"
 etc.

我对 R 有点陌生,并尝试了以下方法:

View(a@.Data)
View(a)
View(a@.Data[])

我怀疑我在 S4 类及其语法方面缺乏一些知识,你能告诉我如何在数据查看器中显示实际数据吗?

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1 回答 1

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首先尝试将对象更改为数据框,然后应用视图功能

View(as.data.frame(a@.Data))
于 2020-02-05T15:33:57.387 回答