I am working with the tidygraph package and try to find a "tidy" solution
for the example below. The problem is not really tied to tidygraph and more about data wrangling but I think it is interesting for people working with this package.
In the following code chunk I just generate some sample data.
library(tidyverse)
library(tidygraph)
library(igraph)
library(randomNames)
library(reshape2)
graph <- play_smallworld(1, 100, 3, 0.05)
labeled_graph <- graph %>%
activate(nodes) %>%
mutate(group = sample(letters[1:3], size = 100, replace = TRUE),
name = randomNames(100)
)
sub_graphs_df <- labeled_graph %>%
morph(to_split, group) %>%
crystallise()
The resulting data.frame looks as follows:
sub_graphs_df
# A tibble: 3 x 2
name graph
<chr> <list>
1 group: a <S3: tbl_graph>
2 group: b <S3: tbl_graph>
3 group: c <S3: tbl_graph>
Now to my actual problem. I want do apply a function to each element in the column graph. The result is simply a named vector.
sub_graphs_df$graph %>% map(degree)
The first thing I do not like is the subsetting by $. Is there a better way?
Next, I want to reshape this result into only one data.frame with 3 columns. One column for name (the name attribute of the vectors), one for group (the name attribute of the list) and one for the number (the elements of the vectors).
I tried melt from the reshape2 package.
sub_graphs_df$graph %>% map(degree) %>% melt
It works decently but the names are lost and as I read it, one should use
tidyr instead. However, I could not get gather to work because only data.frames are accepted.
Another option would be unlist:
sub_graphs_df$graph %>% map(degree) %>% unlist
Here the group and the name are in the names attribute and I would have to recover them with regular expressions.
I am pretty sure there is an easy way I just could not think of.