lmfit
我正在尝试使用 python 和模块进行多参数拟合。我一直按照此处显示的示例作为我的代码的基础。据我了解代码,我应该能够进行最小二乘拟合,只要我正确定义我的目标函数(给出残差)并为其提供正确的参数。
这是我目前的目标函数:
# Define objective function: each data point has a different
# objective function which is defined by the model method
# the objective function returns the array to be minimized
def objfunc(params,trans,sum_in,sum_out,data):
""" model fit using branching ratios and resonance strength
then subtract data """
model = fit_model(params,trans,sum_in,sum_out)
return model - data
fit_model(args*)
方法定义为
def fit_model(params,trans,sum_in,sum_out):
""" model the transition based upon the input string trans
using parameter convention for the branching """
model = []
# The amplitude: technically the resonance strength term
# here it gives the number of resonant decays
amp = params['amp'].value
# For each transition we want to retrieve the parameter values
# for the branching ratios and evaluate the new value for
# the fit (of that transition). The easiest way to do this is
# to store the braching ratios with the same notation used
# previously, and to explicity call those values using the
# 'params.['']value' method
for i in range(len(trans)):
# Employs the termvalue() method to evalueate the branching
# and efficiency values
model.append( str(amp * termValue(trans[i]) + amp * termValue(sum_in[i]) - amp * termValue(sum_out[i])))
return np.array(model,dtype='float64')
这给了我我期望得到的东西:numpy.ndarray
我的数据的长度。我遇到的问题是,当我尝试最小化卡方拟合时
result = minimize(objfunc,params,args=(trans,sum_in,sum_out,data))
我收到错误消息:
File "path/chisquare.py", line 94, in <module>
result = minimize(objfunc,params,args=(trans,sum_in,sum_out,data))
File "/usr/local/lib/python2.7/dist-packages/lmfit-0.7-py2.7.egg/lmfit/minimizer.py", line 498, in minimize
fitter.leastsq()
File "/usr/local/lib/python2.7/dist-packages/lmfit-0.7-py2.7.egg/lmfit/minimizer.py", line 369, in leastsq
lsout = scipy_leastsq(self.__residual, self.vars, **lskws)
File "/usr/lib/python2.7/dist-packages/scipy/optimize/minpack.py", line 278, in leastsq
raise TypeError('Improper input: N=%s must not exceed M=%s' % (n,m))
TypeError: Improper input: N=26 must not exceed M=25
我试图从源代码中弄清楚这意味着什么lmfit
,但这有点超出我的理解。有谁知道我可以如何解决这个错误?
谢谢