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我刚刚为 nextflow 创建了一个新环境，但是当我运行脚本时，流程步骤扩展如下：

[warm up] executor > local
[9c/f50613] Submitted process > bowtie2_target_genome (2)
[1f/1b1f43] Submitted process > bowtie2_vector (1)
[d0/4b99a5] Submitted process > bowtie2_vector (3)
[ef/183556] Submitted process > bowtie2_target_genome (1)
[4a/330246] Submitted process > bowtie2_target_genome (4)
[0b/1e00ff] Submitted process > bowtie2_vector (4)
[bd/ad292b] Submitted process > bowtie2_vector (2)
[98/1caa92] Submitted process > bowtie2_vector (5)
[55/2f25bb] Submitted process > bowtie2_target_genome (5)
[05/5890e2] Submitted process > bowtie2_target_genome (3)

它曾经是这样的：

executor >  local (1)
[14/0418b6] process > bowtie2_target_genome (3)      [100%] 5 of 5
[a3/7b824b] process > bowtie2_vector (1)             [100%] 5 of 5
[fc/1b8883] process > aln_sum (5)                    [100%] 5 of 5
[57/0762c0] process > create_bedgraph_and_bigwig (2) [100%] 5 of 5
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1 回答 1

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看起来您已添加-ansi-log false到运行命令中。此选项的默认值为“true”，因此请使用该选项或完全删除该选项。

-ansi-log false在非交互式 shell 中运行 Nextflow 时，设置很有帮助。您的命令行可能如下所示：

nextflow run -ansi-log false main.nf
于 2020-12-22T02:04:15.450 回答