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我正在尝试通过自制软件安装 JAGS,以便可以在 R 中使用它。每次安装时都会收到以下警告:

Warning: jags dependency gcc was built with a different C++ standard
library (libstdc++ from clang). This may cause problems at runtime.

然后,当我尝试rjags在 R 中安装时,出现以下错误:

configure: error: "cannot link to JAGS library in /usr/local/Cellar/jags/4.3.0_2/lib."
ERROR: configuration failed for package ‘rjags’
* removing ‘/usr/local/lib/R/4.0/site-library/rjags’

我还尝试按照 JAGS 4.3.0 自述文件中的安装指南进行操作。一旦我转移到 R,这会产生同样的错误。

谷歌搜索将我带到以下链接,这些链接似乎都没有足够密切的关系来帮助我:

https://github.com/Homebrew/brew/issues/4904 https://github.com/Homebrew/homebrew-core/issues/32112 在 Mac OS X 上链接不同的 C++ 标准库

这也是我的全部结果brew doctor

(base) aridf@Aris-MacBook-Pro ~ % brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and which additional flags to use when
compiling and linking.

Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew-provided
script of the same name. We found the following "config" scripts:
  /Users/aridf/opt/anaconda3/bin/icu-config
  /Users/aridf/opt/anaconda3/bin/krb5-config
  /Users/aridf/opt/anaconda3/bin/freetype-config
  /Users/aridf/opt/anaconda3/bin/xslt-config
  /Users/aridf/opt/anaconda3/bin/libpng16-config
  /Users/aridf/opt/anaconda3/bin/libpng-config
  /Users/aridf/opt/anaconda3/bin/xml2-config
  /Users/aridf/opt/anaconda3/bin/python3-config
  /Users/aridf/opt/anaconda3/bin/curl-config
  /Users/aridf/opt/anaconda3/bin/ncursesw6-config
  /Users/aridf/opt/anaconda3/bin/pcre-config
  /Users/aridf/opt/anaconda3/bin/python3.8-config

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
  /usr/local/lib/libtcl8.6.dylib
  /usr/local/lib/libtk8.6.dylib

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/fakemysql.h
  /usr/local/include/fakepq.h
  /usr/local/include/fakesql.h
  /usr/local/include/itcl.h
  /usr/local/include/itcl2TclOO.h
  /usr/local/include/itclDecls.h
  /usr/local/include/itclInt.h
  /usr/local/include/itclIntDecls.h
  /usr/local/include/itclMigrate2TclCore.h
  /usr/local/include/itclTclIntStubsFcn.h
  /usr/local/include/mysqlStubs.h
  /usr/local/include/odbcStubs.h
  /usr/local/include/pqStubs.h
  /usr/local/include/tcl.h
  /usr/local/include/tclDecls.h
  /usr/local/include/tclOO.h
  /usr/local/include/tclOODecls.h
  /usr/local/include/tclPlatDecls.h
  /usr/local/include/tclThread.h
  /usr/local/include/tclTomMath.h
  /usr/local/include/tclTomMathDecls.h
  /usr/local/include/tdbc.h
  /usr/local/include/tdbcDecls.h
  /usr/local/include/tdbcInt.h
  /usr/local/include/tk.h
  /usr/local/include/tkDecls.h
  /usr/local/include/tkPlatDecls.h

Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .pc files:
  /usr/local/lib/pkgconfig/tcl.pc
  /usr/local/lib/pkgconfig/tk.pc

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libtclstub8.6.a
  /usr/local/lib/libtkstub8.6.a

谢谢!

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1 回答 1

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根据https://gist.github.com/casallas/8411082的解决方案是更改~/.R/Makedir为以下内容:

CC=clang
CXX=clang++

然后在R中重新安装包

于 2020-08-27T19:49:45.007 回答