java - 将数据集和表型标签文件加载到 GSEA 时出现问题

Question

我按照说明格式化了数据集和表型标签文件，但仍然无法正常工作。这是错误信息。这是数据集文件的图像

---- Full Error Message ----
There were errors: ERROR(S) #:1
Parsing trouble
java.lang.IllegalArgumentExcepti ...

---- Stack Trace ----
# of exceptions: 1
------Unknown file format: /Users/normanfultang/Google Drive (normanfultang@gmail.com)/PostDoc Research/GSEA analyses/gsea.gct no known Parser for ext: ------
java.lang.IllegalArgumentException: Unknown file format: /Users/normanfultang/Google Drive (normanfultang@gmail.com)/PostDoc Research/GSEA analyses/gsea.gct no known Parser for ext: 
    at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:768)
    at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:725)
    at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserWorker.doInBackground(ParserWorker.java:51)
    at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source)
    at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
    at java.desktop/javax.swing.SwingWorker.run(Unknown Source)
    at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
    at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
    at java.base/java.lang.Thread.run(Unknown Source)

Answer 1

可能文件类型不正确。在这种格式下，它需要保存为 .gct 文件。否则，您可以删除前两行并另存为 .txt 文件。

可以在此处找到可接受的文件类型和格式的说明。