我是 python 新手并运行命令:
点安装 pysam
结果是:
Collecting pysam
Using cached https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz
ERROR: Command errored out with exit status 1:
command: 'c:\path\programs\python\python38\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\path\\Local\\Temp\\pip-install-qzuue1yz\\pysam\\setup.py'"'"'; __file__='"'"'C:\\path\\Temp\\pip-install-qzuue1yz\\pysam\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base pip-egg-info
Complete output (23 lines):
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
'.' is not recognized as an internal or external command,
operable program or batch file.
'.' is not recognized as an internal or external command,
operable program or batch file.
File "<string>", line 1, in <module>
File "C:\path\Local\Temp\pip-install-qzuue1yz\pysam\setup.py", line 241, in <module>
htslib_make_options = run_make_print_config()
File "C:\path\\Local\Temp\pip-install-qzuue1yz\pysam\setup.py", line 68, in run_make_print_config
stdout = subprocess.check_output(["make", "-s", "print-config"])
File "c:\path\programs\python\python38\lib\subprocess.py", line 411, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "c:\path\programs\python\python38\lib\subprocess.py", line 489, in run
File "c:\path\programs\python\python38\lib\subprocess.py", line 854, in __init__
self._execute_child(args, executable, preexec_fn, close_fds,
File "c:\path\programs\python\python38\lib\subprocess.py", line 1307, in _execute_child
hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
FileNotFoundError: [WinError 2] The system cannot find the file specified
# pysam: htslib configure options: None
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
这里有什么问题?
最初我收到关于未安装 cython 的错误,所以我运行了 pip install cython 并且能够毫无问题地运行它。