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我正在尝试安装 Rfast 包。它给了我以下错误,

/usr/lib/R/etc/Makeconf:168: recipe for target 'Norm.o' failed
    make: *** [Norm.o] Error 1

完整的错误信息是这样的,

> install.packages("Rfast", dependencies = TRUE)

* installing *source* package 'Rfast' ...
** package 'Rfast' successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG  -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/RcppArmadillo/include"   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Diag.cpp -o Diag.o
g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG  -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I"/home/haseeb/R/x86_64-pc-linux-gnu-library/3.4/RcppArmadillo/include"   -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Norm.cpp -o Norm.o
In file included from Norm.cpp:4:0:
templates.h: In function 'SEXPREC* eachrow_helper(SEXP, SEXP)':
templates.h:904:15: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
   T *xx=(T *) DATAPTR(x),*xend=xx+ncol*nrow,*yy=(T *) DATAPTR(y),yvalue,*x3;
               ^~~~~~~
templates.h:904:15: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
templates.h:904:55: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
   T *xx=(T *) DATAPTR(x),*xend=xx+ncol*nrow,*yy=(T *) DATAPTR(y),yvalue,*x3;
                                                       ^~~~~~~
templates.h:905:32: error: there are no arguments to 'DATAPTR' that depend on a template parameter, so a declaration of 'DATAPTR' must be available [-fpermissive]
   RETURN_TYPE *m=(RETURN_TYPE*)DATAPTR(mat);
                                ^~~~~~~
/usr/lib/R/etc/Makeconf:168: recipe for target 'Norm.o' failed
make: *** [Norm.o] Error 1
ERROR: compilation failed for package 'Rfast'

我的 sessioninfo 如下,

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=C                 LC_NUMERIC=C               LC_TIME=de_DE.UTF-8       
 [4] LC_COLLATE=C               LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=C             
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4    yaml_2.2.0 

有没有人可以帮我解决这个问题?

4

2 回答 2

5

我相信问题是我忘记添加

#include <Rinlinedfuns.h>

但我不能使用这个文件。DATAPTR 在此文件中声明。

于 2018-08-06T13:59:34.847 回答
0

我在运行 Ubuntu 16.04 的台式机和笔记本电脑上遇到了完全相同的错误,我不知道如何解决这个问题。

对我来说,这似乎是一种糟糕的编码习惯(在没有事先声明的情况下使用 DATAPTR(x) 函数)。我试图在头文件中找到 DATAPTR 的声明,但没有找到。

DATAPTR(x)定义在 中/usr/share/R/include/Rinternals.h,它没有明确包含在 中Norm.cpp,而它包含在 中Diag.cpp,后者编译没有错误。

我不知道为什么这会在其他机器上编译而只在我们的机器上失败。g++ 版本是:

g++ (Ubuntu 5.4.0-6ubuntu1~16.04.10) 5.4.0 20160609

我希望如果Rinternals.h在需要 DATAPTR 的地方没有明确包含,那么它应该在所有安装中失败,除非有办法指示编译器Rinternals.h默认包含?

于 2018-08-06T07:08:53.960 回答