My workflow often includes PBS job submissions to a shared cluster that need to either wait in the scheduling queue, take over 24hrs to run or both. I'd like to run snakemake
in the 'background' and get my prompt back while these jobs are running. I know this can be done using tmux
, screen
, or &
but is there is a better way to do this?
I guess submitting a bash wrapper script with the snakemake
commands inside is an option but I think I'm lacking some understanding of the workflow.