If I interpret you correctly, you are wondering how to handle the fact that you need one authToken for Calendar, and one authToken for Docs?
Looking at some sample code for using the client libraries, could you do something like this:
private final static String CAL_AUTH_TOKEN_TYPE = "cl";
private final static String DOCS_AUTH_TOKEN_TYPE = "writely"; // Not sure this is correct
// This will ask the user for permissions the first time
Bundle docsBundle = manager.getAuthToken(account, DOCS_AUTH_TOKEN_TYPE, true, null, null);
Bundle calBundle = manager.getAuthToken(account, CAL_AUTH_TOKEN_TYPE, true, null, null);
// Do whatever syncing you need
doWork(docsBundle, calBundle);
When you do this the first time, the user will get a popup requesting access to his Calendar. Once approved, another popup should appear asking permission for Docs. Once approval is given, the popups never appear again (unless the user maybe re-installs your app). So I don't think you need to worry about anything. Just make sure that you try to get the authTokens the first time in your UI-thread and not in a background process. In a background process, a popup window will not appear.