我正在尝试在OpenSUSE 11.3上的 R 2.14.1-9.1 上安装rJava包。我见过这个问题，但它是针对 Ubuntu 的。我已经安装了 Sun JDK 并重新配置了系统以使用它。
admin@linux-nb3w:~> java -version
java version "1.6.0_29"
Java(TM) SE Runtime Environment (build 1.6.0_29-b11)
Java HotSpot(TM) Client VM (build 20.4-b02, mixed mode)
admin@linux-nb3w:~>
编辑 1：
更新了 JDK 和 JRE。现在，当我运行时出现稍微不同的错误install.packages("rJava")，我得到以下错误输出（发布了新错误，并以粗体结尾）：
> install.packages("rJava")
Installing package(s) into ‘/home/admin/R/i686-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/rJava_0.9-3.tar.gz'
Content type 'application/x-gzip' length 537153 bytes (524 Kb)
opened URL
==================================================
downloaded 524 Kb
* installing *source* package ‘rJava’ ...
** package ‘rJava’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags : '-I/usr/lib/jvm/java-1.6.0-sun-1.6.0/jre/../include -I/usr/lib/jvm/java-1.6.0-sun-1.6.0/jre/../include/linux'
java libs : '-L/usr/lib/jvm/java-1.6.0-sun-1.6.0/jre/lib/i386/client -L/usr/lib/jvm/java-1.6.0-sun-1.6.0/jre/lib/i386 -L/usr/lib/jvm/java-1.6.0-sun-1.6.0/jre/../lib/i386 -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm'
checking whether JNI programs can be compiled... yes
checking JNI data types... configure: error: One or more JNI types differ from the corresponding native type. You may need to use non-standard compiler flags or a different compiler in order to fix this.
ERROR: configuration failed for package ‘rJava’
* removing ‘/home/admin/R/i686-pc-linux-gnu-library/2.14/rJava’
The downloaded packages are in
‘/tmp/RtmpIFKEha/downloaded_packages’
Warning message:
In install.packages("rJava") :
installation of package ‘rJava’ had non-zero exit status
>
新的错误行：
检查 JNI 数据类型...配置：错误：一种或多种 JNI 类型与相应的本机类型不同。您可能需要使用非标准编译器标志或不同的编译器来解决此问题。
我确实运行了R CMD javareconfas root。它使 cpp 标志字段为空。我知道这是它失败的原因之一，但不知道如何解决它。
我已经尝试过使用 dependencies=TRUE 选项并明确指定 repo 的安装命令（例如 repo="blah blah"）。没有任何效果。
我不知道如何更新 OpenSUSE。但对于 SUSE，似乎没有简单的方法可以做到这一点，这与 Ubuntu 不同，这里明确给出了步骤。
任何帮助表示赞赏。