我有四组 A、B、C 和 D,如下所示:
A <- c("ENSG00000103472", "ENSG00000130600", "ENSG00000177335", "ENSG00000177337",
"ENSG00000178977", "ENSG00000180139", "ENSG00000180539", "ENSG00000187621",
"ENSG00000188511", "ENSG00000197099", "ENSG00000203446", "ENSG00000203739",
"ENSG00000203804", "ENSG00000204261", "ENSG00000204282", "ENSG00000204584",
"ENSG00000205056", "ENSG00000205837", "ENSG00000206337", "ENSG00000213057")
B <- c("ENSG00000146521", "ENSG00000165511", "ENSG00000174171", "ENSG00000176659",
"ENSG00000179428", "ENSG00000179840", "ENSG00000180539", "ENSG00000204261",
"ENSG00000204282", "ENSG00000204949", "ENSG00000206337", "ENSG00000223534",
"ENSG00000223552", "ENSG00000223725", "ENSG00000226252", "ENSG00000226751",
"ENSG00000226777", "ENSG00000227066", "ENSG00000227260", "ENSG00000227403")
C <- c("ENSG00000167912", "ENSG00000168405", "ENSG00000172965", "ENSG00000177234",
"ENSG00000177699", "ENSG00000177822", "ENSG00000179428", "ENSG00000179840",
"ENSG00000180139", "ENSG00000181800", "ENSG00000181908", "ENSG00000183674",
"ENSG00000189238", "ENSG00000196668", "ENSG00000196979", "ENSG00000197301",
"ENSG00000203446", "ENSG00000203999", "ENSG00000204261", "ENSG00000206337")
D <- c("ENSG00000122043", "ENSG00000162888", "ENSG00000167912", "ENSG00000176320",
"ENSG00000177699", "ENSG00000179253", "ENSG00000179428", "ENSG00000179840",
"ENSG00000180539", "ENSG00000181800", "ENSG00000185433", "ENSG00000188511",
"ENSG00000189238", "ENSG00000197301", "ENSG00000205056", "ENSG00000205562",
"ENSG00000213279", "ENSG00000214922", "ENSG00000215533", "ENSG00000218018")
一个upset
情节给了我以下结果:
library(UpSetR)
mine <- list("A" = A,
"B" = B,
"C" = C,
"D" = D)
upset(fromList(mine), keep.order = TRUE)
但我对查看特定集合之间的交叉点很感兴趣。A & B, A & C, A & D
. 所以,我这样做如下:
upset(fromList(mine), intersections = list(list("A"),list("B"),list("C"),
list("D"),list("A", "B"),
list("A", "C"),
list("A", "D")), keep.order = TRUE)
但是,A 和 B 之间的共同点是 4,A 和 C 是 4,A 和 D 是 3。为什么上面的混乱图显示错误的数字?
如何正确显示正确的常用号码?我不想要所有集合之间的共同点。