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从树解释器返回的 SHAP 值为.shap_values(some_data)XGB 和随机森林提供了不同的维度/结果。我试过调查它，但似乎无法找到原因或方式，或者在任何 Slundberg 的（SHAP dude's）教程中的解释。所以：

  • 我失踪有什么原因吗？
  • 是否有一些标志可以为每个类返回 XGB 的 shap 值，就像其他不明显或我遗漏的模型一样？

下面是一些示例代码！

import xgboost.sklearn as xgb
import pandas as pd
from sklearn.ensemble import RandomForestClassifier
from sklearn.datasets import load_breast_cancer
from sklearn.model_selection import train_test_split
import shap

bc = load_breast_cancer()
cancer_df = pd.DataFrame(bc['data'], columns=bc['feature_names'])
cancer_df['target'] = bc['target']
cancer_df = cancer_df.iloc[0:50, :]
target = cancer_df['target']
cancer_df.drop(['target'], inplace=True, axis=1)

X_train, X_test, y_train, y_test = train_test_split(cancer_df, target, test_size=0.33, random_state = 42)

xg = xgb.XGBClassifier()
xg.fit(X_train, y_train)
rf = RandomForestClassifier()
rf.fit(X_train, y_train)

xg_pred = xg.predict(X_test)
rf_pred = rf.predict(X_test)

rf_explainer = shap.TreeExplainer(rf, X_train)
xg_explainer = shap.TreeExplainer(xg, X_train)

rf_vals = rf_explainer.shap_values(X_train)
xg_vals = xg_explainer.shap_values(X_train)

print('Random Forest')
print(type(rf_vals))
print(type(rf_vals[0]))
print(rf_vals[0].shape)
print(rf_vals[1].shape)

print('XGBoost')
print(type(xg_vals))
print(xg_vals.shape)

输出：

Random Forest
<class 'list'>
<class 'numpy.ndarray'>
(33, 30)
(33, 30)
XGBoost
<class 'numpy.ndarray'>
(33, 30)

任何想法都是有帮助的！谢谢！

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1 回答 1

2

对于二进制分类：

  • XGBClassifier（sklearn API）的 SHAP 值是类的原始值1（一维）
  • SHAP 值是和类（二维）RandomForestClassifier的概率。01

演示

from xgboost import XGBClassifier
from sklearn.ensemble import RandomForestClassifier
from sklearn.datasets import load_breast_cancer
from sklearn.model_selection import train_test_split
from shap import TreeExplainer
from scipy.special import expit

X, y = load_breast_cancer(return_X_y=True)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=42)

xgb = XGBClassifier(
    max_depth=5, n_estimators=100, eval_metric="logloss", use_label_encoder=False
).fit(X_train, y_train)
xgb_exp = TreeExplainer(xgb)
xgb_sv = np.array(xgb_exp.shap_values(X_test))
xgb_ev = np.array(xgb_exp.expected_value)

print("Shape of XGB SHAP values:", xgb_sv.shape)

rf = RandomForestClassifier(max_depth=5, n_estimators=100).fit(X_train, y_train)
rf_exp = TreeExplainer(rf)
rf_sv = np.array(rf_exp.shap_values(X_test))
rf_ev = np.array(rf_exp.expected_value)

print("Shape of RF SHAP values:", rf_sv.shape)

Shape of XGB SHAP values: (143, 30)
Shape of RF SHAP values: (2, 143, 30)

解释：

  • XGBoost (143,30) 尺寸：
    • 143：测试中的样本数
    • 30：特征数量
  • RF (2,143,30) 尺寸：
    • 2：输出类数
    • 143：样本数
    • 30：特征数量

要将xgboostSHAP 值与预测概率以及类别进行比较，您可以尝试将 SHAP 值添加到基本（预期）值。对于测试中的第 0 个数据点，它将是：

xgb_pred = expit(xgb_sv[0,:].sum() + xgb_ev)
assert np.isclose(xgb_pred, xgb.predict_proba(X_test)[0,1])

要将RFSHAP 值与第 0 个数据点的预测概率进行比较：

rf_pred = rf_sv[1,0,:].sum() + rf_ev[1]
assert np.isclose(rf_pred, rf.predict_proba(X_test)[0,1])

请注意，此分析适用于 (i) sklearnAPI 和 (ii) 二进制分类。

于 2021-01-09T04:39:17.053 回答