我正在尝试使用 BCBio GFF 解析器解析 GFF 文件,但出现以下错误。有人可以帮我解决这个问题吗?
回溯(最近一次通话最后):
File "gff_parse.py", line 6, in <module>
for rec in GFF.parse(in_handle):
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 709, in parse
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 299, in parse_in_parts
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 320, in parse_simple
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 603, in _gff_process
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 634, in _lines_to_out_info
File "build/bdist.linux-x86_64/egg/BCBio/GFF/GFFParser.py", line 183, in _gff_line_map
ValueError: invalid literal for int() with base 10: 'New Start'
这是我的代码:
from BCBio import GFF
in_file = "infile.gff"
in_handle = open(in_file)
for rec in GFF.parse(in_handle):
print rec
in_handle.close()
谢谢图利卡