我使用estimateR (vegan) 从 mothur 输出生成此表。但是,到目前为止,我无法继续这样做,因为我不知道如何从表格中绘图......
row.names ALG.1 ALG.2 ALG.3 ALG.4 ALG.4 ALG.5 ALG.6 ALG.7 ALG.8 ALG.9 ALG.10 ALG.11 ALG.12 ALG.13 ALG.14 ALG.15 ALG.16 ALG.17 ALG.18 ALG.19 ALG.20 ALG.21 ALG.22 ALG.23 ALG.24 ALG.15
S.obs 244.000000 274.00000 432.00000 616.00000 428.00000 544.00000 550.00000 237.00000 428.00000 411.00000 296.00000 409.00000 673.00000 409.00000 692.00000 403.00000 550.00000 513.00000 434.0000 416.00000 521.00000 586.00000 525.00000 507.00000 737.00000 192.000000
S.chao1 410.000000 488.34483 716.28571 1353.04000 624.41892 797.57391 912.66667 577.00000 820.09091 708.15873 507.45161 649.05455 958.33835 731.05556 1139.96330 615.89831 840.75258 808.66250 638.2500 730.20755 884.03797 1041.48913 801.89655 903.51316 1256.44444 235.555556
se.chao1 52.378560 58.30493 55.19781 120.11798 40.23044 43.30181 62.21725 88.81297 73.45103 59.21679 56.35563 51.88047 45.57582 66.61600 69.60445 45.99529 50.79424 54.64472 41.8505 65.66254 64.93072 74.54944 50.48197 70.74512 73.41056 16.410243
我希望我能更精通 R,但我正在努力执行两项任务:
1. Averaging sample values into groups as following:
ALG.1 Cviri
ALG.2 Cviri
ALG.3 Cviri
ALG.4 Ccela
ALG.5 Pfict
ALG.6 Pfict
ALG.7 Pfict
ALG.8 Dfrag
ALG.9 Dfrag
ALG.10 Dfrag
ALG.11 Ccela
ALG.12 Ccela
ALG.13 Ccela
ALG.14 Ccela
ALG.15 Ccela
ALG.16 Ccela
ALG.17 Pfict
ALG.18 Pfict
ALG.19 Pfict
ALG.20 Pfict
ALG.21 Pfict
ALG.22 Pfict
ALG.23 Pfict
ALG.24 Pfict
ALG.25 Pfict
ALG.26 Cviri
(对不起,列表很大)
2. Plot bar plots (S.obs and S.chao1 side by side) for all species (Cviri, Ccela, Pfict, Dfrag), with se.chao1 as the standard error for S.chao1.
提前感谢您提供的任何帮助!
干杯! 安德烈