我有一张大桌子(图片),如下所示:
然后我导入并提取了一些如下:
mytable<-read.table(file="annotation.txt", na.strings=c("", "NA"), header=F, sep="\t")
> str(mytable)
'data.frame': 1320 obs. of 933 variables:
$ V3 : chr "ACSS2" "IDH3B" "RPE" "UGT1A10" ...
$ V4 : chr "GCK" "DLST" "RPIA" "UGT1A8" ...
$ V5 : chr "PGK2" "PCK2" "PGM2" "RPE" ...
$ V6 : chr "PGK1" "CS" "PGLS" "UGT1A7" ...
$ V7 : chr "PDHB" "PDHB" "PRPS2" "UGT1A6" ...
$ V8 : chr "PDHA1" "PCK1" "FBP2" "UGT2B28" ...
$ V9 : chr "PDHA2" "PDHA1" "PFKM" "UGT1A5" ...
$ V10 : chr "PGM2" "LOC642502" "PFKL" "CRYL1" ...
$ V11 : chr "TPI1" "PDHA2" "TALDO1" "UGDH" ...
$ V12 : chr "ACSS1" "LOC283398" "TKT" "UGT2A1" ...
$ V13 : chr "FBP1" "FH" "FBP1" "GUSB" ...
$ V14 : chr "ADH1B" "SDHD" "TKTL2" "UGT1A9" ...
######up to:
$ V97 : chr NA NA NA NA ...
$ V98 : chr NA NA NA NA ...
$ V99 : chr NA NA NA NA ...
$ V100: chr NA NA NA NA ...
$ V101: chr NA NA NA NA ...
> example_table<-mytable[1:5, 1:5]
> example_table
V3 V4 V5 V6 V7
KEGG_GLYCOLYSIS_GLUCONEOGENESIS ACSS2 GCK PGK2 PGK1 PDHB
KEGG_CITRATE_CYCLE_TCA_CYCLE IDH3B DLST PCK2 CS PDHB
KEGG_PENTOSE_PHOSPHATE_PATHWAY RPE RPIA PGM2 PGLS PRPS2
KEGG_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS UGT1A10 UGT1A8 RPE UGT1A7 UGT1A6
KEGG_FRUCTOSE_AND_MANNOSE_METABOLISM MPI PMM2 PMM1 FBP2 PFKM
> dput(example_table)
structure(list(V3 = c("ACSS2", "IDH3B", "RPE", "UGT1A10", "MPI"
), V4 = c("GCK", "DLST", "RPIA", "UGT1A8", "PMM2"), V5 = c("PGK2",
"PCK2", "PGM2", "RPE", "PMM1"), V6 = c("PGK1", "CS", "PGLS",
"UGT1A7", "FBP2"), V7 = c("PDHB", "PDHB", "PRPS2", "UGT1A6",
"PFKM")), .Names = c("V3", "V4", "V5", "V6", "V7"), row.names = c("KEGG_GLYCOLYSIS_GLUCONEOGENESIS",
"KEGG_CITRATE_CYCLE_TCA_CYCLE", "KEGG_PENTOSE_PHOSPHATE_PATHWAY",
"KEGG_PENTOSE_AND_GLUCURONATE_INTERCONVERSIONS", "KEGG_FRUCTOSE_AND_MANNOSE_METABOLISM"
), class = "data.frame")
我不明白发生了什么。然后,当我想用另一个列表文件设置它时,它没有响应(因为有些是重复的):
> dput(example_SP)
list(c("MPI", "PMM1", "PFKM", "DKFZP434I0714", "TSPYL4", "ACSM3",
"MET", "ADA"))
> setdiff(example_SP[[1]], example_table[5,])
[1] "MPI" "PMM1" "PFKM" "DKFZP434I0714" "TSPYL4" "ACSM3"
[7] "MET" "ADA"
如果有人可以帮助我,那就太好了。问候