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我有大量格式为

d1={'el1':2, 'el3':4, ...,'el12':32}
d2={'el3':5, 'el4':6, ...,'el12':21}

我想使用 networkx 创建一个单一的网络,其中:每个节点都是字典的键之一,其属性表示节点的所有值的总和(例如,考虑到这两个,el3 将是 9给定字典),如果两个节点一起出现在同一个字典中,则在两个节点之间有一条边,权重属性等于它们一起出现的次数(例如,el3 和 el12 为 2,因为它们一起出现在 2 个字典中)。

我知道如何创建网络以及如何向 networkx 中的节点和边添加属性,但我正在寻找一种有效的方法,因为我有大约 12.000 个这样的字典。

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1 回答 1

1

不知道你能比蛮力快多少,但 itertools 可以使添加边缘更容易,使用permutations/combinations...

d1 = {'el1': 2, 'el3': 4, 'el5': 17, 'el12':32}
d2 = {'el1': 5, 'el3': 9, 'el5': 11, 'el12':6}
d3 = {'el1': 1, 'el6': 2, 'el7': 41, 'el12':13}

d = [d1, d2, d3]

G = nx.DiGraph()
# or just Graph() if not weighted
# If unweighted, you should use combinations() instead, as for a given list
# ['e1', 'e2', 'e3'], permutations(l, 2) will give both ('e1', 'e2') and ('e2','e1')
# whereas combinations will give only one of those. 

for item in d:
    G.add_nodes_from(item)
    for entry in item:
        try: 
            G.node[entry]['weight'] += item[entry]
        except:
            G.node[entry]['weight'] = item[entry]
    for source, target in itertools.permutations(item.keys(), 2):
        G.add_edge(source, target)
        try: 
            G.edge[source][target]['weight'] += 1
        except:
            G.edge[source][target]['weight'] = 1

G.node
{'el1': {'weight': 8},
 'el12': {'weight': 51},
 'el3': {'weight': 13},
 'el5': {'weight': 28},
 'el6': {'weight': 2},
 'el7': {'weight': 41}}
G.edge
{'el1': {'el12': {'weight': 3},
  'el3': {'weight': 2},
  'el5': {'weight': 2},
  'el6': {'weight': 1},
  'el7': {'weight': 1}},
 'el12': {'el1': {'weight': 3},
  'el3': {'weight': 2},
  'el5': {'weight': 2},
  'el6': {'weight': 1},
  'el7': {'weight': 1}},
 'el3': {'el1': {'weight': 2}, 'el12': {'weight': 2}, 'el5': {'weight': 2}},
 'el5': {'el1': {'weight': 2}, 'el12': {'weight': 2}, 'el3': {'weight': 2}},
 'el6': {'el1': {'weight': 1}, 'el12': {'weight': 1}, 'el7': {'weight': 1}},
 'el7': {'el1': {'weight': 1}, 'el12': {'weight': 1}, 'el6': {'weight': 1}}}
于 2013-10-16T13:02:15.820 回答