8

我正在尝试运行此代码，以对我拥有的每一帧运行相同的命令（几乎没有更改）：

traj.reset()
import os
#os.chdir(outname)
for i, frame in enumerate(traj):
    frame.superpose()
    comando = "python hollow.py -c constraint -o hollow_%s.pdb urei%s.pdb" % (i, i)
    os.system(comando)
    pml_cmd = "pymol urei%s.pdb hollow_%s.pdb -c -d 'as cartoon, urei%s;color gray90, urei%s;center chain A;set_view (\-0.605158150,0.089404292,0.791067421,\0.795849979,0.093013920,0.598304033,\-0.020089993,0.991641700,-0.127439827,\0.000000000,0.000000000,-202.017959595,\-28.771762848,-7.683309555,10.745590210,\-568.485290527,972.520690918,-20.000000000);bg white;as sphere, hollow_%s;color cyan, hollow_%s;ray;save urei%s.png' " % (i, i, i, i, i, i, i)
    os.system(pml_cmd)
    #remove = "rm urei%s.pdb hollow_%s.pdb" % (i, i)
    #os.system(remove)
os.chdir("../")

我运行这个，我得到这个错误：

TypeError                                 Traceback (most recent call last)
<ipython-input-8-53cd3e7bd107> in <module>()
      7     os.system(comando)
          8     pml_cmd = "pymol urei%s.pdb hollow_%s.pdb -c -d 'as cartoon, urei%s;color gray90, urei%s;center chain A;set_view (\-0.605158150,0.089404292,0.791067421,\0.795849979,0.093013920,0.598304033,\-0.020089993,0.991641700,-0.127439827,\0.000000000,0.000000000,-202.017959595,\-28.771762848,-7.683309555,10.745590210,\-568.485290527,972.520690918,-20.000000000);bg white;as sphere, hollow_%s;color cyan, hollow_%s;ray;save urei%s.png' " % (i, i, i, i, i, i, i)
----> 9     os.system(pml_cmd)
     10     #remove = "rm urei%s.pdb hollow_%s.pdb" % (i, i)
     11     #os.system(remove)

TypeError: must be string without null bytes, not str

我在互联网上搜索，但我找不到一个好的答案。

4

2 回答 2

4

问题在于 \ char 应该被双重转义，即更改为“\\” 或者在字符串 decleration 之前添加一个“r”：

pml_cmd = r"pymol urei%s.pdb ..."

你得到这个特殊的错误，因为沿着字符串的某个地方有一个 \0 被解释为一个 NULL char

于 2014-02-05T08:19:41.793 回答
0

我能够通过注释掉以下内容来解决此错误print：

for tarfileobj in inputs:
    # print(tarfileobj)
    tarfileobj.extractall(path=t, members=None)

我本可以完成print(tarfileobj.split)或打印repr或删除\0空字节，或者如果它是一个 tar 文件，只需提取它。

于 2016-12-17T03:48:01.783 回答