I am trying to make a knitr-based program that reads rmarkdown from a character vector and writes to a textConnection. I am getting almost what I want but I find that knitr only produces html for chunks and just passes through the rmarkdown to html.
Here is the code:
text_input <- "Title
========================================================
This is an R Markdown document. Markdown is a simple formatting syntax for authoring web pages (click the **MD** toolbar button for help on Markdown).
When you click the **Knit HTML** button a web page will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:
```{r cache=TRUE}
x <- cars
summary(x)
```
You can also embed plots, for example:
```{r fig.width=7, fig.height=6,cache=TRUE}
plot(x)
```
"
library(knitr)
outfile <- textConnection("foo.html", "w")
pat_md()
render_html()
knit(input=NULL,output=outfile,text=text_input)
close(outfile)
cat(foo.html,sep="\n")
Which outputs:
Title
========================================================
This is an R Markdown document. Markdown is a simple formatting syntax for authoring web pages (click the **MD** toolbar button for help on Markdown).
When you click the **Knit HTML** button a web page will be generated that includes both content as well as the output of any embedded R code chunks within the document. You can embed an R code chunk like this:
<div class="chunk" id="unnamed-chunk-1"><div class="rcode"><div class="source"><pre class="knitr r">x <- cars
summary(x)
</pre></div><div class="output"><pre class="knitr r">## speed dist
## Min. : 4.0 Min. : 2
## 1st Qu.:12.0 1st Qu.: 26
## Median :15.0 Median : 36
## Mean :15.4 Mean : 43
## 3rd Qu.:19.0 3rd Qu.: 56
## Max. :25.0 Max. :120
</pre></div></div></div>
You can also embed plots, for example:
<div class="chunk" id="unnamed-chunk-2"><div class="rcode"><div class="source"><pre class="knitr r">plot(x)
</pre></div><div class="rimage default"><img src="figure/unnamed-chunk-2.png" title="plot of chunk unnamed-chunk-2" alt="plot of chunk unnamed-chunk-2" class="plot" /></div>
</div></div>
Is this the expected behavior or am I doing something wrong?