r - 垂直直方图

Question

我想做一个垂直直方图。理想情况下，我应该能够每天在一个地块上放置多个。

如果这可以与 quantmod 实验 chart_Series 或其他一些能够为时间序列绘制条形的库相结合，那就太好了。请参阅随附的屏幕截图。理想情况下，我可以绘制这样的图。

有什么内置的或现有的库可以帮助解决这个问题吗？

Answer 1

大约一年前，我写了一些东西来在基本图形中做垂直直方图。这是一个使用示例。

VerticalHist <- function(x, xscale = NULL, xwidth, hist,
                         fillCol = "gray80", lineCol = "gray40") {
    ## x (required) is the x position to draw the histogram
    ## xscale (optional) is the "height" of the tallest bar (horizontally),
    ##   it has sensible default behavior
    ## xwidth (required) is the horizontal spacing between histograms
    ## hist (required) is an object of type "histogram"
    ##    (or a list / df with $breaks and $density)
    ## fillCol and lineCol... exactly what you think.
    binWidth <- hist$breaks[2] - hist$breaks[1]
    if (is.null(xscale)) xscale <- xwidth * 0.90 / max(hist$density)
    n <- length(hist$density)
    x.l <- rep(x, n)
    x.r <- x.l + hist$density * xscale
    y.b <- hist$breaks[1:n]
    y.t <- hist$breaks[2:(n + 1)]

    rect(xleft = x.l, ybottom = y.b, xright = x.r, ytop = y.t,
         col = fillCol, border = lineCol)
}



## Usage example
require(plyr) ## Just needed for the round_any() in this example
n <- 1000
numberOfHists <- 4
data <- data.frame(ReleaseDOY = rnorm(n, 110, 20),
                   bin = as.factor(rep(c(1, 2, 3, 4), n / 4)))
binWidth <- 1
binStarts <- c(1, 2, 3, 4)
binMids <- binStarts + binWidth / 2
axisCol <- "gray80"

## Data handling
DOYrange <- range(data$ReleaseDOY)
DOYrange <- c(round_any(DOYrange[1], 15, floor),
                      round_any(DOYrange[2], 15, ceiling))

## Get the histogram obects
histList <- with(data, tapply(ReleaseDOY, bin, hist, plot = FALSE,
    breaks = seq(DOYrange[1], DOYrange[2], by = 5)))
DOYmean <- with(data, tapply(ReleaseDOY, bin, mean))

## Plotting
par(mar = c(5, 5, 1, 1) + .1)
plot(c(0, 5), DOYrange, type = "n",
     ann = FALSE, axes = FALSE, xaxs = "i", yaxs = "i")

axis(1, cex.axis = 1.2, col = axisCol)
mtext(side = 1, outer = F, line = 3, "Length at tagging (mm)",
      cex = 1.2)
axis(2, cex.axis = 1.2, las = 1, line = -.7, col = "white",
    at = c(75, 107, 138, 169),
    labels = c("March", "April", "May", "June"), tck = 0)
mtext(side = 2, outer = F, line = 3.5, "Date tagged", cex = 1.2)
box(bty = "L", col = axisCol)

## Gridlines
abline(h = c(60, 92, 123, 154, 184), col = "gray80")

biggestDensity <- max(unlist(lapply(histList, function(h){max(h[[4]])})))
xscale <- binWidth * .9 / biggestDensity

## Plot the histograms
for (lengthBin in 1:numberOfHists) {
    VerticalHist(binStarts[lengthBin], xscale = xscale,
                         xwidth = binWidth, histList[[lengthBin]])
    }

Answer 2

小提琴情节可能与您想要的足够接近。它们是通过一个轴镜像的密度图，就像箱线图和密度图的混合体。（通过示例比描述更容易理解。:-)）

这是 ggplot2 实现的一个简单（有点难看）示例：

library(ggplot2)
library(lubridate)

data(economics) #sample dataset

# calculate year to group by using lubridate's year function
economics$year<-year(economics$date)

# get a subset 
subset<-economics[economics$year>2003&economics$year<2007,]    

ggplot(subset,aes(x=date,y=unemploy))+
    geom_line()+geom_violin(aes(group=year),alpha=0.5)

一个更漂亮的例子是：

ggplot(subset,aes(x=date,y=unemploy))+ 
    geom_violin(aes(group=year,colour=year,fill=year),alpha=0.5, 
    kernel="rectangular")+    # passes to stat_density, makes violin rectangular 
    geom_line(size=1.5)+      # make the line (wider than normal)
    xlab("Year")+             # label one axis
    ylab("Unemployment")+     # label the other
    theme_bw()+                     # make white background on plot
    theme(legend.position = "none") # suppress legend

要包括范围而不是线或除了线之外，您将使用 geom_linerange 或 geom_pointrange。

Answer 3

如果您使用网格图形，那么您可以在任何您想要的位置创建旋转的视口并绘制到旋转的视口。您只需要一个将使用网格图形绘制到指定视口中的函数，我建议为此使用 ggplot2 或可能的 lattice。

rect在基本图形中，您可以编写自己的函数来绘制旋转直方图（修改 plot.histogram 函数或使用或其他工具从头开始编写自己的函数）。然后，您可以使用subplotTeachingDemos 包中的功能将绘图放置在较大绘图上的任何位置。