My c# project sends an injected key combo to the foreground window. In notepad, Firefox, IE9 everything works as it should, but Adobe Illustrator CS5 seems to misinterpret the sent combos: for example CTRL+G becomes CTRL+SHIFT+WHEEL_DOWN so instead of grouping selected objects it scrolls the page to the left. (A low level keyboard hook also confirmed that I'm sending the right combo.)
A quick test showed that there is method in this madness, so CTRL+F appears as CTRL+SHIFT+WHEEL_UP.
The system is Windows 7 64bit so at first I suspected some 32 vs 64 bit woe but things work properly in both 32 and 64 bit IE9.