Still in the fiddling stage with C. Not sure what I'm doing wrong here but I think it has to do with pointers. Anyway. I'm trying to read in and parse a tab-delimited text file into a 2D array. The actual array is 6109 x 14, I allotted a bigger pointer array.
FILE *in = fopen("afile","rt");
// read the first line from the file
char line[2000];
int x=0;
int y=0;
char *result[7000][14];
char *curResult;
char delim[]= "\t";
while (fgets(line, 2000, in) != NULL) {
printf("LINE IS %s\n",line);
curResult=NULL;
curResult = strtok(line,delim);
y=0;
while( curResult != NULL ) {
result[x][y]= curResult;
curResult = strtok( NULL, delim );
y++;
}
x++;
}
//print a random line to check
for(int i=0; i<10; i++)
printf("%s\n", result[50][i]);
The line I printed at the bottom which should be the 50th line prints the last line of the text file. I tried this with different numbers instead of 50 but they all print the same thing.
EDIT: afile looks like this:
instance_id batch_id cmap_name INN1 concentration (M) duration (h) cell2 array3 perturbation_scan_id vehicle_scan_id4 scanner vehicle vendor catalog_number catalog_name
1 1 metformin INN 0.00001 6 MCF7 HG-U133A EC2003090503AA EC2003090502AA HP GeneArray Scanner medium Sigma-Aldrich D5035 "1,1-dimethylbiguanide hydrochloride"
2 1 metformin INN 0.00001 6 MCF7 HG-U133A EC2003090504AA EC2003090502AA HP GeneArray Scanner medium Sigma-Aldrich D5035 "1,1-dimethylbiguanide hydrochloride"
3 1 metformin INN 0.0000001 6 MCF7 HG-U133A EC2003090505AA EC2003090502AA HP GeneArray Scanner medium Sigma-Aldrich D5035 "1,1-dimethylbiguanide hydrochloride"
4 1 metformin INN 0.001 6 MCF7 HG-U133A EC2003090506AA EC2003090502AA HP GeneArray Scanner medium Sigma-Aldrich D5035 "1,1-dimethylbiguanide hydrochloride"
21 2 phenformin INN 0.00001 6 MCF7 HG-U133A EC2003091104AA EC2003091102AA HP GeneArray Scanner medium Sigma-Aldrich P7045 phenformin hydrochloride
22 2 phenyl biguanide 0.00001 6 MCF7 HG-U133A EC2003091105AA EC2003091102AA HP GeneArray Scanner medium Sigma-Aldrich P19906 1-phenylbiguanide hydrochloride
23 2 valproic acid INN 0.001 6 MCF7 HG-U133A EC2003091106AA EC2003091102AA HP GeneArray Scanner medium Sigma-Aldrich P4543 2-propylpentanoic acid
61 2a metformin INN 0.00001 6 MCF7 HG-U133A EC2003091103AA EC2003091102AA HP GeneArray Scanner medium Sigma-Aldrich D5035 "1,1-dimethylbiguanide hydrochloride"